Stem-loop rno-mir-3584-1

Accession

MI0015458

Description

Rattus norvegicus rno-mir-3584-1 precursor miRNA

Literature search

4 open access papers mention rno-mir-3584-1
(8 sentences)

Sequence

21 reads, 5 reads per million, 21 experiments

guagagcugggcGGGAGGAGUCCAGGAGGCgggagcugccgcggucugguaGCCCGCAUCUCUGGAUCCCcgcagccugca
((((.((((.(.((((....(((((((.((((..(((((((.....))))))))))).)).)))))))))).)))))))).

Structure

-    a    g c    GGAG     -  G    ga       c 
 guag gcug g GGGA    UCCAG GA GCgg  gcugccg g
 |||| |||| | ||||    ||||| || ||||  ||||||| g
 cguc cgac c CCCU    AGGUC CU CGCC  CGauggu u
a    -    g -    ----     U  A    --       c 

Annotation confidence Not enough data

Genome context

chr1: 267672833-267672913 [-]

Mature rno-miR-3584-5p

• Accession: MIMAT0017875
• Description: Rattus norvegicus rno-miR-3584-5p mature miRNA
• Sequence: 13 - GGGAGGAGUCCAGGAGGC - 30
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3584-3p

• Accession: MIMAT0017876
• Description: Rattus norvegicus rno-miR-3584-3p mature miRNA
• Sequence: 52 - GCCCGCAUCUCUGGAUCCC - 70
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249