miRBase entry: rno-mir-3596c

Stem-loop rno-mir-3596c


Accession
MI0015459
Description
Rattus norvegicus rno-mir-3596c precursor miRNA

Literature search
3 open access papers mention rno-mir-3596c
(3 sentences)

Sequence

496319 reads, 0 reads per million, 496 experiments
ccccuuccagugcagggcgcagccuggggaaagcuaggaggccguauagugaucuccucgggugucuuccucaACUAUACAACCUCCUACCUCAgcccggggggcgcggcagguggg
.(((..((..(((...((((..((((((...((.(((((((..((((((((((.((....)).))).......)))))))..))))))).))...))))))..)))).))))).)))

Structure
c   uu  ag   agg    ag      gaa  c       cc       -------   c  c 
 ccc  cc  ugc   gcgc  ccuggg   ag uaggagg  guauagu       gau uc u
 |||  ||  |||   ||||  ||||||   || |||||||  |||||||       ||| ||  
 ggg  gg  acg   cgcg  gggccc   UC AUCCUCC  CAUAUCA       cug gg c
-   -u  --   --g    gg      gAC  C       AA       acuccuu   u  g 


Annotation confidence Not enough data
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Genome context
chr1: 59704372-59704488 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-3596c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3596c

Accession MIMAT0017877
Description Rattus norvegicus rno-miR-3596c mature miRNA
Sequence 74 - ACUAUACAACCUCCUACCUCA - 94
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249