Stem-loop rno-mir-3585

Accession

MI0015460

Description

Rattus norvegicus rno-mir-3585 precursor miRNA

Literature search

1 open access papers mention rno-mir-3585
(2 sentences)

Sequence

25677 reads, 163.0 reads per million, 360 experiments

gccacauggagcaaaucugugugcagugcuuUUCACAAGAAGGUGUCUUUCAUGgggauuaaaacaUGAACGGCCCUUGUUGUGAGGAguaauguacaacauguaaugccuguguggu
(((((((((.(((...(((((((((.((((((((((((.((((.(((.((((((..........)))))).))))))).)))))))))))).))))).))).)...))))))))))))

Structure

         a   aau -   -     g            G    U   U      ggga 
gccacaugg gca   c ugu gugca ugcuuUUCACAA AAGG GUC UUCAUG    u
||||||||| |||   | ||| ||||| |||||||||||| |||| ||| ||||||     
ugguguguc cgu   g aca caugu augAGGAGUGUU UUCC CGG AAGUac    u
         -   aau u   a     a            G    -   C      aaaa 

Annotation confidence High

Genome context

chrX: 155344176-155344293 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-3585

Mature rno-miR-3585-5p

• Accession: MIMAT0017878
• Description: Rattus norvegicus rno-miR-3585-5p mature miRNA
• Sequence: 32 - UUCACAAGAAGGUGUCUUUCAUG - 54
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3585-3p

• Accession: MIMAT0017879
• Description: Rattus norvegicus rno-miR-3585-3p mature miRNA
• Sequence: 67 - UGAACGGCCCUUGUUGUGAGGA - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249