Stem-loop rno-mir-3586

Accession

MI0015461

Description

Rattus norvegicus rno-mir-3586 precursor miRNA

Literature search

1 open access papers mention rno-mir-3586
(4 sentences)

Sequence

2242387 reads, 2 reads per million, 506 experiments

cgggaggugaguaugacgaUCCCUGUCCUCAAGGAGccucagucuaguagggaggagacAUACUAGACUGUGAGCUCCUCGAgggcaggaaagcgcuccaucaucugugcuccaugccca
.(((....((((((((((...(((((((((.(((((((.(((((((((((........).)))))))))).).)))))).)))))))))....)).))........))))))....))).

Structure

c   aggu      --------  -  -aUC         A      - u          - gga 
 ggg    gaguau        ga cg    CCUGUCCUC AGGAGc c cagucuagua g   g
 |||    ||||||        || ||    ||||||||| |||||| | |||||||||| |    
 ccc    cucgug        cu gc    ggacgggAG UCCUCG G GUCAGAUCAU c   g
a   guac      ucuacuac  c  gaaa         C      A U          A aga 

Annotation confidence Not enough data

Genome context

chr7: 114485547-114485666 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3586

Mature rno-miR-3586-5p

• Accession: MIMAT0017880
• Description: Rattus norvegicus rno-miR-3586-5p mature miRNA
• Sequence: 20 - UCCCUGUCCUCAAGGAG - 36
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3586-3p

• Accession: MIMAT0017881
• Description: Rattus norvegicus rno-miR-3586-3p mature miRNA
• Sequence: 60 - AUACUAGACUGUGAGCUCCUCGA - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249