Stem-loop rno-mir-1249

Accession

MI0015470

Description

Rattus norvegicus rno-mir-1249 precursor miRNA

Literature search

8 open access papers mention rno-mir-1249
(13 sentences)

Sequence

69072 reads, 85.0 reads per million, 476 experiments

ucuugcugcuccgauucuuguuugcauggggAGGAGGGAGGGGAUGGGCCAAGUUCccuaugccuggaACGCCCUUCCCCCCCUUCUUCAccuggcgaacuccuacucguccuucaagac
(((((..(...(((.....((((((..(((((((((((.(((((.((((...(((((........))))))))).)))))))))))))).))..))))))......)))..)..))))).

Structure

-     cu cuc   -uucuu      au  -         A     U    CAA     cua 
 ucuug  g   cga      guuugc  gg ggAGGAGGG GGGGA GGGC   GUUCc   u
 |||||  |   |||      ||||||  || ||||||||| ||||| ||||   |||||    
 agaac  c   gcu      caagcg  cc CUUCUUCCC CCCCU CCCG   CAagg   g
c     uu -cu   cauccu      gu  A         -     U    ---     ucc 

Annotation confidence High

Genome context

chr7: 125861192-125861311 [-]

Mature rno-miR-1249-5p

• Accession: MIMAT0052034
• Description: Rattus norvegicus rno-miR-1249-5p mature miRNA
• Sequence: 32 - AGGAGGGAGGGGAUGGGCCAAGUUC - 56
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-1249-3p

• Accession: MIMAT0017892
• Description: Rattus norvegicus rno-miR-1249-3p mature miRNA
• Sequence: 69 - ACGCCCUUCCCCCCCUUCUUCA - 90
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249