Stem-loop rno-mir-344b-1

Accession

MI0015472

Description

Rattus norvegicus rno-mir-344b-1 precursor miRNA

Literature search

10 open access papers mention rno-mir-344b-1
(61 sentences)

Sequence

20017 reads, 52.0 reads per million, 168 experiments

agagaccugaucAGUCAGGCUGCUGGUUAUAUUCCAGgacuucucugguccugGAUAUAACCAAAGCCCGACUGUUaaauaaaaguaagaaugugucu
.......(((.(((((.((((..(((((((((.((((((((.....))))))))))))))))).)))).)))))))).....................

Structure

--------------agagacc   u     A    GC         U        u 
                     uga cAGUC GGCU  UGGUUAUAU CCAGgacu c
                     ||| ||||| ||||  ||||||||| |||||||| u
                     aUU GUCAG CCGA  ACCAAUAUA Gguccugg c
ucuguguaagaaugaaaauaa   -     C    -A         -        u 

Annotation confidence High

Genome context

chr1: 121193138-121193235 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-344b-1

Mature rno-miR-344b-5p

• Accession: MIMAT0017811
• Description: Rattus norvegicus rno-miR-344b-5p mature miRNA
• Sequence: 13 - AGUCAGGCUGCUGGUUAUAUUCCAG - 37
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-344b-1-3p

• Accession: MIMAT0017894
• Description: Rattus norvegicus rno-miR-344b-1-3p mature miRNA
• Sequence: 54 - GAUAUAACCAAAGCCCGACUGUU - 76
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249