Stem-loop rno-mir-3593

Accession

MI0015474

Description

Rattus norvegicus rno-mir-3593 precursor miRNA

Sequence

74 reads, 1 reads per million, 66 experiments

ccaucaccacacgacuggauuuUGGCCUCCGCAGGGUUGAAGCUgcuagagaagCUUCAACCUUAAGGGGGCCUCAgggagagaggagugg
.........(((..((...(((((((((((..((((((((((((........))))))))))))..)))))))...))))...))..))).

Structure

ccaucacca   ga  gga    ---       GC            gcu 
         cac  cu   uuuU   GGCCUCC  AGGGUUGAAGCU   a
         |||  ||   ||||   |||||||  ||||||||||||    
         gug  ga   aggg   CCGGGGG  UUCCAACUUCga   g
--------g   ag  gag    ACU       AA            aga 

Annotation confidence Not enough data

Genome context

chr6: 76661799-76661889 [-]

Mature rno-miR-3593-5p

• Accession: MIMAT0017896
• Description: Rattus norvegicus rno-miR-3593-5p mature miRNA
• Sequence: 23 - UGGCCUCCGCAGGGUUGAAGCU - 44
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3593-3p

• Accession: MIMAT0017897
• Description: Rattus norvegicus rno-miR-3593-3p mature miRNA
• Sequence: 55 - CUUCAACCUUAAGGGGGCCUCA - 76
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249