Stem-loop rno-mir-3120

Accession

MI0015476

Description

Rattus norvegicus rno-mir-3120 precursor miRNA

Literature search

3 open access papers mention rno-mir-3120
(15 sentences)

Sequence

328 reads, 2.0 reads per million, 128 experiments

gguugucauucaggcuggguugucaugugacugCCUGUCUGUGCCUGCUGUACAggugagcggauguucugCACAGCAAGUGUAGACAGGCAgacacaugacaacucuguccaucca
((.((.......(((.(((((((((((((.((((((((((((((.((((((.((((...........)))).)))))).)))))))))))))).))))))))))))).))))).)).

Structure

-  u  ucauuca   u             a              C      A    ugag 
 gg ug       ggc ggguugucaugug cugCCUGUCUGUGC UGCUGU CAgg    c
 || ||       ||| ||||||||||||| |||||||||||||| |||||| ||||    g
 cc ac       cug cucaacaguacac gACGGACAGAUGUG ACGACA gucu    g
a  u  -------   u             a              A      C    ugua 

Annotation confidence High

Genome context

chr13: 80130909-80131025 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-3120

Mature rno-miR-3120-5p

• Accession: MIMAT0052035
• Description: Rattus norvegicus rno-miR-3120-5p mature miRNA
• Sequence: 34 - CCUGUCUGUGCCUGCUGUACA - 54
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3120-3p

• Accession: MIMAT0017900
• Description: Rattus norvegicus rno-miR-3120-3p mature miRNA
• Sequence: 72 - CACAGCAAGUGUAGACAGGCA - 92
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249