Stem-loop rno-mir-3120

Accession

MI0015476

Description

Rattus norvegicus rno-mir-3120 precursor miRNA

Literature search

2 open access papers mention rno-mir-3120
(2 sentences)

Sequence

52855 reads, 15 reads per million, 469 experiments

gguugucauucaggcuggguugucaugugacugccugucugugccugcuguacaggugagcggauguucugCACAGCAAGUGUAGACAGGCAgacacaugacaacucuguccaucca
((.((.......(((.(((((((((((((.((((((((((((((.((((((.((((...........)))).)))))).)))))))))))))).))))))))))))).))))).)).

Structure

-  u  ucauuca   u             a              c      a    ugag 
 gg ug       ggc ggguugucaugug cugccugucugugc ugcugu cagg    c
 || ||       ||| ||||||||||||| |||||||||||||| |||||| ||||    g
 cc ac       cug cucaacaguacac gACGGACAGAUGUG ACGACA gucu    g
a  u  -------   u             a              A      C    ugua 

Annotation confidence Not enough data

Genome context

chr13: 80130909-80131025 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-3120

Mature rno-miR-3120

• Accession: MIMAT0017900
• Description: Rattus norvegicus rno-miR-3120 mature miRNA
• Sequence: 72 - CACAGCAAGUGUAGACAGGCA - 92
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249