Stem-loop rno-mir-3595

Accession

MI0015478

Description

Rattus norvegicus rno-mir-3595 precursor miRNA

Sequence

reads, None reads per million, experiments

gugguuucccaagcagcauuugauacugaaaacGUGGAUUUUCCUCUACGAUuagucauuaauauuguacucauagaaggagaaucuaccuuuuaaauaucaaagaacaacucgauccag
.(((..((..........(((((((...((((.(((((((((((((((.((...((((.......)).)))).))).)))))))))))).))))...))))))).........)).))).

Structure

g   uu  ccaagcagca       cug    c            -   C  Uua  -  uu 
 ugg  uc          uuugaua   aaaa GUGGAUUUUCCU CUA GA   gu ca  a
 |||  ||          |||||||   |||| |||||||||||| ||| ||   || ||  a
 acc  ag          aaacuau   uuuu caucuaagagga gau cu   ca gu  u
g   -u  -cucaacaag       aaa    c            a   a  ---  u  ua 

Annotation confidence Not enough data

Genome context

chr6: 133873587-133873706 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-3595

Mature rno-miR-3595

• Accession: MIMAT0017903
• Description: Rattus norvegicus rno-miR-3595 mature miRNA
• Sequence: 34 - GUGGAUUUUCCUCUACGAU - 52
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249