Stem-loop rno-mir-328b

Accession

MI0015479

Description

Rattus norvegicus rno-mir-328b precursor miRNA

Literature search

16 open access papers mention rno-mir-328b
(245 sentences)

Sequence

312 reads, 2 reads per million, 137 experiments

ggaggagggggagggagggaaggggcgagggaggggcuagaagguagucggcagaugcaaccauuaggcuggCUGGCCCUCUCUGCCCUAccccccaccucacuaacccguggccucc
(((((..((((((((.(((..(((((.((((((((.(........(((((((.((((....))))..)))))))).)))))))))))))..))).).)))).....)))....)))))

Structure

     --ag   -----    - a   aa     g        g uagaaggu       -a    c 
ggagg    ggg     gagg g ggg  ggggc agggaggg c        agucggc  gaug a
|||||    |||     |||| | |||  ||||| |||||||| |        |||||||  ||||  
ccucc    ccc     cucc c ccc  UCCCG UCUCUCCC G        UCggucg  uuac a
     ggug   aauca    a c   cA     -        G --------       ga    c 

Annotation confidence Low

Genome context

chr14: 45331146-45331263 [+]

Mature rno-miR-328b-3p

• Accession: MIMAT0017904
• Description: Rattus norvegicus rno-miR-328b-3p mature miRNA
• Sequence: 73 - CUGGCCCUCUCUGCCCUA - 90
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249