Stem-loop cin-mir-3575

Accession

MI0015481

Description

Ciona intestinalis cin-mir-3575 precursor miRNA

Sequence

9 reads, 4 reads per million, 2 experiments

AUCACCAUUACCAGGCAGUAuuagacacacaaugcuccGAUACUACGUGGUUGGUGAUUC
(((((((..((((.(.((((((.((((.....)).)).)))))).).)))))))))))..

Structure

--       UU    G C      a  -  c 
  AUCACCA  ACCA G AGUAuu ga ca a
  |||||||  |||| | |||||| || || c
  UAGUGGU  UGGU C UCAUAG cu gu a
CU       --    G A      c  c  a 

Annotation confidence Not enough data

Genome context

scaffold_71: 128186-128245 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-mir-3575

Mature cin-miR-3575-5p

• Accession: MIMAT0016394
• Description: Ciona intestinalis cin-miR-3575-5p mature miRNA
• Sequence: 1 - AUCACCAUUACCAGGCAGUA - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-3575-3p

• Accession: MIMAT0016395
• Description: Ciona intestinalis cin-miR-3575-3p mature miRNA
• Sequence: 39 - GAUACUACGUGGUUGGUGAUUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39