Stem-loop cin-mir-4000e

Accession

MI0015502

Description

Ciona intestinalis cin-mir-4000e precursor miRNA

Sequence

8164 reads, 2721 reads per million, 2 experiments

UGAAACUUCUUCGGAACAGGccgguuuaaaaucuuauccuauaugggcaagguuucgauuucccGGCCUCUCUCGGAGGUUUCA
((((((((((..(((..(((((((.((.(((((((.(((.....))).))))))).))....))))))).))).))))))))))

Structure

          UC   AC       ---u  a       a   u 
UGAAACUUCU  GGA  AGGccgg    uu aaaucuu ucc a
||||||||||  |||  |||||||    || ||||||| ||| u
ACUUUGGAGG  UCU  UCCGGcc    ag uuuggaa ggg a
          -C   -C       cuuu  c       c   u 

Annotation confidence High

Genome context

3p: 1538091-1538174 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-4000e

Mature cin-miR-4000e-5p

• Accession: MIMAT0016434
• Description: Ciona intestinalis cin-miR-4000e-5p mature miRNA
• Sequence: 1 - UGAAACUUCUUCGGAACAGG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4000e-3p

• Accession: MIMAT0016435
• Description: Ciona intestinalis cin-miR-4000e-3p mature miRNA
• Sequence: 65 - GGCCUCUCUCGGAGGUUUCA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39