Stem-loop cin-mir-4001i

Accession

MI0015511

Description

Ciona intestinalis cin-mir-4001i precursor miRNA

Sequence

195455 reads, 71459 reads per million, 2 experiments

AGGAACUUCCCAAGGAACAGgcuaaccuugcagCCUGUCCCCGGGCAUUCCGA
.((((...(((..(((.((((((........)))))))))..)))..))))..

Structure

-A    CUU   AA   A      aac 
  GGAA   CCC  GGA CAGgcu   c
  ||||   |||  ||| ||||||    
  CCUU   GGG  CCU GUCCga   u
AG    -AC   CC   -      cgu 

Annotation confidence Not enough data

Genome context

3p: 1539042-1539094 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-4001i

Mature cin-miR-4001i-5p

• Accession: MIMAT0016966
• Description: Ciona intestinalis cin-miR-4001i-5p mature miRNA
• Sequence: 1 - AGGAACUUCCCAAGGAACAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4001i-3p

• Accession: MIMAT0016967
• Description: Ciona intestinalis cin-miR-4001i-3p mature miRNA
• Sequence: 34 - CCUGUCCCCGGGCAUUCCGA - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39