Stem-loop cin-mir-4001e

Accession

MI0015516

Description

Ciona intestinalis cin-mir-4001e precursor miRNA

Sequence

9739 reads, 3182 reads per million, 2 experiments

UGGAACUUAUUUUGAACAGGcuguauaaaacAGCUGAUCAUAUAAGUUU
..((((((((..(((.(((.((((.....))))))).))).))))))))

Structure

UG        UU   A   G    a 
  GAACUUAU  UGA CAG cugu u
  ||||||||  ||| ||| |||| a
  UUUGAAUA  ACU GUC GAca a
--        -U   A   -    a 

Annotation confidence Not enough data

Genome context

7q: 5413168-5413216 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-4001e

Mature cin-miR-4001e-5p

• Accession: MIMAT0016454
• Description: Ciona intestinalis cin-miR-4001e-5p mature miRNA
• Sequence: 1 - UGGAACUUAUUUUGAACAGG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4001e-3p

• Accession: MIMAT0016455
• Description: Ciona intestinalis cin-miR-4001e-3p mature miRNA
• Sequence: 32 - AGCUGAUCAUAUAAGUUU - 49
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39