Stem-loop cin-mir-4001f

Accession

MI0015517

Description

Ciona intestinalis cin-mir-4001f precursor miRNA

Sequence

51766 reads, 19638 reads per million, 2 experiments

UGGAACUUACUAAUGAACAGgcuuguguacagcuuagcacuauuuucgaauguuggugcuagcucguugauauaaacagCCUGUUGUAAGUAAGCUCCA
((((.((((((....(((((((((((((.(((((((((((((...........)))))))))...)))))))))...))))))))...)))))).))))

Structure

    A      AAUG        ---     a    ---         uuuu 
UGGA CUUACU    AACAGgcu   ugugu cagc   uuagcacua    c
|||| ||||||    ||||||||   ||||| ||||   |||||||||    g
ACCU GAAUGA    UUGUCCga   auaua guug   gaucguggu    a
    C      -AUG        caa     -    cuc         ugua 

Annotation confidence High

Genome context

3p: 1537068-1537166 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-4001f

Mature cin-miR-4001f-5p

• Accession: MIMAT0016456
• Description: Ciona intestinalis cin-miR-4001f-5p mature miRNA
• Sequence: 1 - UGGAACUUACUAAUGAACAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4001f-3p

• Accession: MIMAT0016457
• Description: Ciona intestinalis cin-miR-4001f-3p mature miRNA
• Sequence: 80 - CCUGUUGUAAGUAAGCUCCA - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39