Stem-loop cin-mir-4003a-2

Accession

MI0015525

Description

Ciona intestinalis cin-mir-4003a-2 precursor miRNA

Sequence

152 reads, 66 reads per million, 2 experiments

UGAGUUGGUUAUACAUUCUUgcgauauuuaaguauaauagCAAGAAUUUUAACCAACACA
...((((((((...((((((((..(((......)))...))))))))..))))))))...

Structure

UGA        UAC        -ga   uu 
   GUUGGUUA   AUUCUUgc   uau  a
   ||||||||   ||||||||   |||   
   CAACCAAU   UAAGAACg   aua  a
ACA        -UU        aua   ug 

Annotation confidence Not enough data

Genome context

7q: 6168087-6168146 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-mir-4003a-2

Mature cin-miR-4003a-5p

• Accession: MIMAT0016461
• Description: Ciona intestinalis cin-miR-4003a-5p mature miRNA
• Sequence: 1 - UGAGUUGGUUAUACAUUCUU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4003a-3p

• Accession: MIMAT0016462
• Description: Ciona intestinalis cin-miR-4003a-3p mature miRNA
• Sequence: 41 - CAAGAAUUUUAACCAACACA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39