miRBase entry: cin-mir-4005b

Stem-loop cin-mir-4005b


Accession
MI0015527
Description
Ciona intestinalis cin-mir-4005b precursor miRNA


Sequence

32 reads, 14 reads per million, 2 experiments
UGAGUUGGUGCUAUCAUGCUuguguauuacgucaCAAGGGGAAGUACCAGCUCU
.(((((((((((.((.(.((((((........)))))).)))))))))))))).

Structure
U           A  A G      uau 
 GAGUUGGUGCU UC U CUugug   u
 ||||||||||| || | ||||||    
 CUCGACCAUGA AG G GAACac   a
U           -  - G      ugc 


Annotation confidence Not enough data
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Genome context
7q: 6154057-6154110 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from cin-mir-4005b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4005b-5p

Accession MIMAT0016467
Description Ciona intestinalis cin-miR-4005b-5p mature miRNA
Sequence 1 - UGAGUUGGUGCUAUCAUGCU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4005b-3p

Accession MIMAT0016468
Description Ciona intestinalis cin-miR-4005b-3p mature miRNA
Sequence 35 - CAAGGGGAAGUACCAGCUCU - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39