Stem-loop cin-mir-4006d

Accession

MI0015533

Description

Ciona intestinalis cin-mir-4006d precursor miRNA

Sequence

21535 reads, 7071 reads per million, 2 experiments

UGGAACAUACAGGUAAGGGCugcugucaucgcagUCUUUAACUGGGUGUUCAAA
..((((((.(((.((((((((((.......)))))))))).))).))))))...

Structure

-UG      A   G          ug 
   GAACAU CAG UAAGGGCugc  u
   |||||| ||| ||||||||||  c
   CUUGUG GUC AUUUCUgacg  a
AAA      G   A          cu 

Annotation confidence High

Genome context

7q: 5413757-5413810 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-4006d

Mature cin-miR-4006d-5p

• Accession: MIMAT0016476
• Description: Ciona intestinalis cin-miR-4006d-5p mature miRNA
• Sequence: 1 - UGGAACAUACAGGUAAGGGC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4006d-3p

• Accession: MIMAT0016477
• Description: Ciona intestinalis cin-miR-4006d-3p mature miRNA
• Sequence: 35 - UCUUUAACUGGGUGUUCAAA - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39