Stem-loop cin-mir-4012-2

Accession

MI0015556

Description

Ciona intestinalis cin-mir-4012-2 precursor miRNA

Sequence

5 reads, 2 reads per million, 2 experiments

AAGCUUAUGUUCAUGUAUGCuguguguauauaugugguacAGCAUUAUGUAUGUGAGCU
.(((((((((.((((.((((((((..(((....))).)))))))))))).)))))))))

Structure

A         U    U        ug   a 
 AGCUUAUGU CAUG AUGCugug  uau u
 ||||||||| |||| ||||||||  |||  
 UCGAGUGUA GUAU UACGAcau  gug a
-         U    -        -g   u 

Annotation confidence Not enough data

Genome context

scaffold_67: 366261-366319 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-mir-4012-2

Mature cin-miR-4012-5p

• Accession: MIMAT0016512
• Description: Ciona intestinalis cin-miR-4012-5p mature miRNA
• Sequence: 1 - AAGCUUAUGUUCAUGUAUGC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4012-3p

• Accession: MIMAT0016513
• Description: Ciona intestinalis cin-miR-4012-3p mature miRNA
• Sequence: 41 - AGCAUUAUGUAUGUGAGCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39