miRBase entry: cin-mir-4026

Stem-loop cin-mir-4026


Accession
MI0015577
Description
Ciona intestinalis cin-mir-4026 precursor miRNA


Sequence

8 reads, 4 reads per million, 2 experiments
GUAAGUGAUGACGUCAUUUGacacgucacgUCUAUGACGUCAUUACUACG
(((.(((((((((((((..(((.......))).)))))))))))))))).

Structure
-   A             UU   ac 
 GUA GUGAUGACGUCAU  Gac  g
 ||| |||||||||||||  |||  u
 CAU CAUUACUGCAGUA  CUg  c
G   -             -U   ca 


Annotation confidence Not enough data
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Genome context
scaffold_89: 466718-466767 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4026
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4026-5p

Accession MIMAT0016542
Description Ciona intestinalis cin-miR-4026-5p mature miRNA
Sequence 1 - GUAAGUGAUGACGUCAUUUG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4026-3p

Accession MIMAT0016543
Description Ciona intestinalis cin-miR-4026-3p mature miRNA
Sequence 31 - UCUAUGACGUCAUUACUACG - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39