Stem-loop cin-mir-4027

Accession

MI0015578

Description

Ciona intestinalis cin-mir-4027 precursor miRNA

Sequence

2 reads, 1 reads per million, 2 experiments

GUUGAACAUAAACAUAAUAUaaauaaauauauuuuauuuuagcgguaauuugaaauacuaaucaauuguuuUAUAUUACUUUUAUGUUCAG
..((((((((((..(((((((((..(((..(((.((((((((.......))))))))..)))..)))..)))))))))..)))))))))).

Structure

GU          CA         ua   au   -u        cg 
  UGAACAUAAA  UAAUAUaaa  aau  auu  uauuuuag  g
  ||||||||||  |||||||||  |||  |||  ||||||||  u
  ACUUGUAUUU  AUUAUAUuu  uua  uaa  auaaaguu  a
-G          UC         ug   ac   uc        ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature cin-miR-4027-5p

• Accession: MIMAT0016544
• Description: Ciona intestinalis cin-miR-4027-5p mature miRNA
• Sequence: 1 - GUUGAACAUAAACAUAAUAU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4027-3p

• Accession: MIMAT0016545
• Description: Ciona intestinalis cin-miR-4027-3p mature miRNA
• Sequence: 72 - UAUAUUACUUUUAUGUUCAG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39