Stem-loop cin-mir-4049

Accession

MI0015600

Description

Ciona intestinalis cin-mir-4049 precursor miRNA

Sequence

2318 reads, 833 reads per million, 2 experiments

CAGGUAAAUCUUUCAGCUUGUCgcgcugcgccaccuggcggaaaugccagAAGCUGUGGGCUUUGCCUAA
.(((((((.(((.((((((.(.(((.(.((((....)))).)..))).).)))))).))).)))))))..

Structure

-C       U   U      G C   -c g    a 
  AGGUAAA CUU CAGCUU U gcg  u cgcc c
  ||||||| ||| |||||| | |||  | ||||  
  UCCGUUU GGG GUCGAA a cgu  a gcgg c
AA       C   U      g c   aa g    u 

Annotation confidence Not enough data

Genome context

5q: 3936738-3936807 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-4049

Mature cin-miR-4049-5p

• Accession: MIMAT0016587
• Description: Ciona intestinalis cin-miR-4049-5p mature miRNA
• Sequence: 1 - CAGGUAAAUCUUUCAGCUUGUC - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4049-3p

• Accession: MIMAT0016588
• Description: Ciona intestinalis cin-miR-4049-3p mature miRNA
• Sequence: 51 - AAGCUGUGGGCUUUGCCUAA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39