Stem-loop cin-mir-4088

Accession

MI0015641

Description

Ciona intestinalis cin-mir-4088 precursor miRNA

Sequence

1406 reads, 2129.0 reads per million, 9 experiments

GACUAUGAUGAGAUGUUGGaguacugggcucugaucugcaugauugACAAUCUCCACACUGAGUCCA
((((.((..(((((((((((((.....)))))((((.....))))))).)))))..))...))))..

Structure

--    --A  AU     -   -------------     a 
  GACU   UG  GAGAU GUU             GGagu c
  ||||   ||  ||||| |||             ||||| u
  CUGA   AC  CUCUA CAg             ucucg g
AC    GUC  AC     A   uuaguacgucuag     g 

Annotation confidence Medium

Genome context

ref|NC_020169.1|: 5132372-5132438 [-]

Mature cin-miR-4088-5p

• Accession: MIMAT0016664
• Description: Ciona intestinalis cin-miR-4088-5p mature miRNA
• Sequence: 1 - GACUAUGAUGAGAUGUUGG - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4088-3p

• Accession: MIMAT0016665
• Description: Ciona intestinalis cin-miR-4088-3p mature miRNA
• Sequence: 47 - ACAAUCUCCACACUGAGUCCA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39