Stem-loop cin-mir-4097

Accession

MI0015650

Description

Ciona intestinalis cin-mir-4097 precursor miRNA

Sequence

53 reads, 18 reads per million, 2 experiments

CAAUAUAAAGUUGACCUGAaauaaccucauuaacgcugguuugaccuugauuaaccucguuagugagugaccucAGGUCAGCUUUGCCAUCAAC
.....((((((((((((((......((((((((((..((((...........)))).)))))))))).....))))))))))))))........

Structure

---CAAUA              aauaac          cu    ugac 
        UAAAGUUGACCUGA      cucauuaacg  gguu    c
        ||||||||||||||      ||||||||||  ||||    u
        GUUUCGACUGGAcu      gagugauugc  ccaa    u
CAACUACC              -ccagu          -u    uuag 

Annotation confidence Not enough data

Genome context

scaffold_266: 51848-51941 [-]

Mature cin-miR-4097-5p

• Accession: MIMAT0016678
• Description: Ciona intestinalis cin-miR-4097-5p mature miRNA
• Sequence: 1 - CAAUAUAAAGUUGACCUGA - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4097-3p

• Accession: MIMAT0016679
• Description: Ciona intestinalis cin-miR-4097-3p mature miRNA
• Sequence: 75 - AGGUCAGCUUUGCCAUCAAC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39