miRBase entry: cin-mir-4099

Stem-loop cin-mir-4099


Accession
MI0015652
Description
Ciona intestinalis cin-mir-4099 precursor miRNA


Sequence

15 reads, 7 reads per million, 2 experiments
UUUGGCACCAUGACGAUCAAcuuauaaacuauguaguuagcaacuuuauugcuuauugguauaaagcauaguagCGGAUUGACAUGGUGUCAGA
((((((((((((.(((((..((.....((((((((((.(((((.....))))).)))........)))))))))..))))).))))))))))))

Structure
            A     AA  uauaa       --------   u     c 
UUUGGCACCAUG CGAUC  cu     acuaugu        agu agcaa u
|||||||||||| |||||  ||     |||||||        ||| ||||| u
AGACUGUGGUAC GUUAG  ga     ugauacg        uua ucguu u
            A     GC  -----       aaauaugg   u     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_92: 391347-391440 [+]

Database links

Mature cin-miR-4099-5p

Accession MIMAT0016682
Description Ciona intestinalis cin-miR-4099-5p mature miRNA
Sequence 1 - UUUGGCACCAUGACGAUCAA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4099-3p

Accession MIMAT0016683
Description Ciona intestinalis cin-miR-4099-3p mature miRNA
Sequence 75 - CGGAUUGACAUGGUGUCAGA - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39