Stem-loop cin-mir-4142

Accession

MI0015697

Description

Ciona intestinalis cin-mir-4142 precursor miRNA

Sequence

15 reads, 5 reads per million, 2 experiments

UAGCAGCUCAUCUGGUAUAAaaagacgcagauguuucuuuaaaaauuccagauguuUUUUCAGACCAGAUGUGCUACC
....(((.((((((((...(((((((((....((((......))))....).))))))))...)))))))).)))...

Structure

UAGC   U        AUA        - agau    cu 
    AGC CAUCUGGU   Aaaagacg c    guuu  u
    ||| ||||||||   |||||||| |    ||||   
    UCG GUAGACCA   UUUUuugu g    uaaa  u
-CCA   U        GAC        a accu    aa 

Annotation confidence Not enough data

Genome context

scaffold_95: 353409-353486 [+]

Mature cin-miR-4142-5p

• Accession: MIMAT0016742
• Description: Ciona intestinalis cin-miR-4142-5p mature miRNA
• Sequence: 1 - UAGCAGCUCAUCUGGUAUAA - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4142-3p

• Accession: MIMAT0016743
• Description: Ciona intestinalis cin-miR-4142-3p mature miRNA
• Sequence: 57 - UUUUCAGACCAGAUGUGCUACC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39