Stem-loop cin-mir-4177

Accession

MI0015732

Description

Ciona intestinalis cin-mir-4177 precursor miRNA

Sequence

1 reads, 1 reads per million, 1 experiments

UAUUUUUAAAACAGCAAUUAaaaucgaaacccacuuuuaaaacagcaauuaacauugggguUAAUUGCUGUUUUAAAAAUA
((((((((((((((((((((........((((....((((........)))).....))))))))))))))))))))))))

Structure

                    aaaucgaa    -acuu    aac 
UAUUUUUAAAACAGCAAUUA        accc     uuaa   a
||||||||||||||||||||        ||||     ||||    
AUAAAAAUUUUGUCGUUAAU        uggg     aauu   g
                    --------    guuac    aac 

Annotation confidence Not enough data

Genome context

2q: 5092762-5092842 [-]

Mature cin-miR-4177-5p

• Accession: MIMAT0016786
• Description: Ciona intestinalis cin-miR-4177-5p mature miRNA
• Sequence: 1 - UAUUUUUAAAACAGCAAUUA - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4177-3p

• Accession: MIMAT0016787
• Description: Ciona intestinalis cin-miR-4177-3p mature miRNA
• Sequence: 62 - UAAUUGCUGUUUUAAAAAUA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39