Stem-loop vvi-MIR3624

Accession

MI0016017

Description

Vitis vinifera vvi-MIR3624 precursor miRNA

Literature search

2 open access papers mention vvi-MIR3624
(6 sentences)

Sequence

385979 reads, 1770.0 reads per million, 224 experiments

ggguaguaugcugcugucuuuagaauaucuggaugAAGUUUAUCUCUGCAAGGUGgcaagaacaucaagaguacuaugguggcuucucugcuggguuaaggcuucuucuggggugauuugauaucaauacucuugaugguuuugccaccuuugcagaucaugagcuccauucucagcuucUCAGGGCAGCAGCAUACUACUU
.(((((((((((((((((((.((((.....(((((.(((((((.(((((((((((((((((.(((((((((((...(((((((......)))..(((((((((((....)))))..)))))))))).))))))))))).)))))))))).)))))))..))))))).))))).....)))).))))))))))))))))))).

Structure

g                   u    uaucu     A       -C       -          a           cua    ggcuucucugcugg      --     u 
 gguaguaugcugcugucuu agaa     ggaug AGUUUAU  UCUGCAA GGUGgcaaga caucaagagua   uggu              guuaag  gcuuc u
 ||||||||||||||||||| ||||     ||||| |||||||  ||||||| |||||||||| |||||||||||   ||||              ||||||  |||||  
 UCAUCAUACGACGACGGGA Ucuu     cuuac ucgagua  agacguu ccaccguuuu guaguucucau   acua              uaguuu  ugggg c
U                   C    cgacu     c       cu       u          g           --a    --------------      ag     u 

Annotation confidence Low

Genome context

gb|CP126655.1|: 2180202-2180403 [+]

Mature vvi-miR3624-5p

• Accession: MIMAT0018011
• Description: Vitis vinifera vvi-miR3624-5p mature miRNA
• Sequence: 36 - AAGUUUAUCUCUGCAAGGUG - 55
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3624-3p

• Accession: MIMAT0018012
• Description: Vitis vinifera vvi-miR3624-3p mature miRNA
• Sequence: 181 - UCAGGGCAGCAGCAUACUACUU - 202
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976