Stem-loop vvi-MIR3628

Accession

MI0016021

Description

Vitis vinifera vvi-MIR3628 precursor miRNA

Sequence

2063 reads, 117.0 reads per million, 53 experiments

gaaugauuauuguuguuaaagagauaauggaaAGGGAUGCGAGAGCCGUGCUUaguaugccaccuacuaagauuauugaauauauaaaacuucaucugCUAAGCACAGCUCUCGCAUCCcuuuccauuaucucucauggcuucccgguuc
((((.......(((((...(((((((((((((((((((((((((((.((((((((((.......................................)))))))))).))))))))))))))))))))))))))).)))))......))))

Structure

    gauuauu     uaa                           C          ugccaccuacuaagauua 
gaau       guugu   agagauaauggaaAGGGAUGCGAGAGC GUGCUUagua                  u
||||       |||||   ||||||||||||||||||||||||||| ||||||||||                  u
cuug       cggua   ucucuauuaccuuucCCUACGCUCUCG CACGAAUCgu                  g
    -gcccuu     --c                           A          cuacuucaaaauauauaa 

Annotation confidence Low

Genome context

gb|CP126660.1|: 17722125-17722274 [-]

Mature vvi-miR3628-5p

• Accession: MIMAT0018019
• Description: Vitis vinifera vvi-miR3628-5p mature miRNA
• Sequence: 33 - AGGGAUGCGAGAGCCGUGCUU - 53
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3628-3p

• Accession: MIMAT0018020
• Description: Vitis vinifera vvi-miR3628-3p mature miRNA
• Sequence: 99 - CUAAGCACAGCUCUCGCAUCC - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976