Stem-loop vvi-MIR3629b

Accession

MI0016023

Description

Vitis vinifera vvi-MIR3629b precursor miRNA

Literature search

2 open access papers mention vvi-MIR3629b
(2 sentences)

Sequence

6714 reads, 55.0 reads per million, 196 experiments

uuuGUUUUCGUCCGGUUUCUCAGcaaccaaacaggguucauucgauuuugaaauuccuacaucggaugcuggguguUGGCUGCUGAGAAAAUGUAGGaagaggga
(((.(((((.(.((.((((((((((.((((.((.....((((((((...(......)...)))))))).....)))))).)))))))))).)).).))))).)))

Structure

   G     G C  G          a    a  ggguu        uuu aa 
uuu UUUUC U CG UUUCUCAGca ccaa ca     cauucgau   g  a
||| ||||| | || |||||||||| |||| ||     ||||||||   |   
agg agaaG A GU AAAGAGUCGU GGUu gu     guaggcua   c  u
   g     G U  A          C    -  ggguc        cau cu 

Annotation confidence Not enough data

Genome context

gb|CP126661.1|: 3158154-3158258 [-]

Mature vvi-miR3629b-5p

• Accession: MIMAT0055900
• Description: Vitis vinifera vvi-miR3629b-5p mature miRNA
• Sequence: 4 - GUUUUCGUCCGGUUUCUCAG - 23
• Evidence: experimental ; unknown

Mature vvi-miR3629b-3p

• Accession: MIMAT0018023
• Description: Vitis vinifera vvi-miR3629b-3p mature miRNA
• Sequence: 77 - UGGCUGCUGAGAAAAUGUAGG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976