Stem-loop vvi-MIR3630

Accession

MI0016026

Description

Vitis vinifera vvi-MIR3630 precursor miRNA

Literature search

2 open access papers mention vvi-MIR3630
(3 sentences)

Sequence

137 reads, 10 reads per million, 2 experiments

caguaugguugUGCAAGUGACGAUAUCAGACAgggacaucagcaccuccaauggagaaugaugauuugucUUUGGGAAUCUCUCUGAUGCACaagcauauug
(((((((.(((((((((.((.(((.(((((((((..(((((....((((...))))..))))).)))))))...)).))))).))..))))))).)))))))

Structure

       g       --  U  C   A  ---       ga     gcac    a 
caguaug uugUGCA  AG GA GAU UC   AGACAgg  cauca    cucc  
||||||| |||||||  || || ||| ||   |||||||  |||||    |||| a
guuauac aaCACGU  UC CU CUA GG   Ucuguuu  guagu    gagg  
       g       AG  U  -   A  GUU       -a     --aa    u 

Annotation confidence Not enough data

Genome context

chr17: 6897444-6897545 [+]

Mature vvi-miR3630-5p

• Accession: MIMAT0018027
• Description: Vitis vinifera vvi-miR3630-5p mature miRNA
• Sequence: 12 - UGCAAGUGACGAUAUCAGACA - 32
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3630-3p

• Accession: MIMAT0018028
• Description: Vitis vinifera vvi-miR3630-3p mature miRNA
• Sequence: 71 - UUUGGGAAUCUCUCUGAUGCAC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976