Stem-loop vvi-MIR3631a

Accession

MI0016027

Description

Vitis vinifera vvi-MIR3631a precursor miRNA

Literature search

2 open access papers mention vvi-MIR3631a
(4 sentences)

Sequence

31059 reads, 197.0 reads per million, 207 experiments

aggugguguuuggucuuugguugaauagaaaaagucaaaauauuuggcuuuuucuauucagcuaaaaguaaCAUGUUGACAUCAUCCAAUAUAauuaaacugaaccuauugauaacaaguucauuuuagcUAUAUUGGAUGAUGUCAACAaguuacuuuuaacugaauagaaaaagccaaauauuuuggcuuuuucuauuuagccaaaaaacaaacaccaccu
((((((((((((...((((((((((((((((((((((((((((((((((((((((((((((.((((((((((.((((((((((((((((((((.(((((.(((((...(((....)))))))).))))).)))))))))))))))))))).)))))))))).))))))))))))))))))))))))))))))))))))))))))))))...))))))))))))

Structure

            guc                                              c          A                    a     c     cua   a 
aggugguguuug   uuugguugaauagaaaaagucaaaauauuuggcuuuuucuauucag uaaaaguaaC UGUUGACAUCAUCCAAUAUA uuaaa ugaac   uug u
||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||||   |||  
uccaccacaaac   aaaccgauuuaucuuuuucgguuuuauaaaccgaaaaagauaaguc auuuucauug ACAACUGUAGUAGGUUAUAU gauuu acuug   aac a
            aaa                                              a          a                    c     u     ---   a 

Annotation confidence Medium

Genome context

gb|CP126659.1|: 12307524-12307746 [-]

Mature vvi-miR3631a-5p

• Accession: MIMAT0018029
• Description: Vitis vinifera vvi-miR3631a-5p mature miRNA
• Sequence: 72 - CAUGUUGACAUCAUCCAAUAUA - 93
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3631a-3p

• Accession: MIMAT0018030
• Description: Vitis vinifera vvi-miR3631a-3p mature miRNA
• Sequence: 131 - UAUAUUGGAUGAUGUCAACA - 150
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976