Stem-loop vvi-MIR3637

Accession

MI0016037

Description

Vitis vinifera vvi-MIR3637 precursor miRNA

Literature search

1 open access papers mention vvi-MIR3637
(1 sentences)

Sequence

76290 reads, 506.0 reads per million, 225 experiments

ugacaugaugacauuaugaguaauauuuuauaaaauuAAGGGUAUUUAUGUAUUGUGUUUUgucggaaaauauguuuggauaguuugauuuugaaacugacauuauauuccgacuguauuauuggauaauacuauuUUUCGACAAGACACAAUGCAUAAAugcucuuaauuuuauaaaauuuaugaguaugccauugugucg
.(((((((((.(((.((..((((.((((((((((((((((((((((((((((((((((((((((((((((((...(((((((((((.......)))))).........)))))..(((((((...)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))..))))).))))))))).

Structure

u         a   u  ga    u                                                ----------------ugu     ---------      ga 
 gacaugaug cau au  guaa auuuuauaaaauuAAGGGUAUUUAUGUAUUGUGUUUUgucggaaaaua                   uugga         uaguuu  u
 ||||||||| ||| ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||                   |||||         ||||||  u
 cuguguuac gua ug  uauu uaaaauauuuuaauucucguAAAUACGUAACACAGAACAGCUUUuuau                   agccu         gucaaa  u
g         c   -  ag    -                                                cauaauagguuauuauguc     uauauuaca      gu 

Annotation confidence Low

Genome context

gb|CP126663.1|: 26207170-26207371 [-]

Mature vvi-miR3637-5p

• Accession: MIMAT0018047
• Description: Vitis vinifera vvi-miR3637-5p mature miRNA
• Sequence: 38 - AAGGGUAUUUAUGUAUUGUGUUUU - 61
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3637-3p

• Accession: MIMAT0018048
• Description: Vitis vinifera vvi-miR3637-3p mature miRNA
• Sequence: 137 - UUUCGACAAGACACAAUGCAUAAA - 160
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976