Stem-loop ame-mir-11

Accession

MI0016136

Description

Apis mellifera ame-mir-11 precursor miRNA

Literature search

5 open access papers mention ame-mir-11
(22 sentences)

Sequence

598179 reads, 8501.0 reads per million, 24 experiments

auggaggauagccguacccugaUGGAGCUCUGGCUGUGACUUGUGuguuaacugaauuaaaaucaCAUCACAGGCAGAGUUCUAGUUagguaacgguuucaaacaaca
.((...((.((((((..(((((((((((((((.((((((..((((..................)))))))))).)))))))))).)))))..))))))))...))...

Structure

--a  gag  u      ac     -          G      CU    uguuaacu 
   ug   ga agccgu  ccuga UGGAGCUCUG CUGUGA  UGUG        g
   ||   || ||||||  ||||| |||||||||| ||||||  ||||         
   ac   cu uuggca  ggaUU AUCUUGAGAC GACACU  ACac        a
aca  aaa  -      au     G          G      --    uaaaauua 

Annotation confidence High

Genome context

CM000062.5: 5463633-5463740 [-]

Mature ame-miR-11-5p

• Accession: MIMAT0053080
• Description: Apis mellifera ame-miR-11-5p mature miRNA
• Sequence: 23 - UGGAGCUCUGGCUGUGACUUGUG - 45
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-11-3p

• Accession: MIMAT0018506
• Description: Apis mellifera ame-miR-11-3p mature miRNA
• Sequence: 66 - CAUCACAGGCAGAGUUCUAGUU - 87
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670