Stem-loop ame-mir-193

Accession

MI0016138

Description

Apis mellifera ame-mir-193 precursor miRNA

Literature search

1 open access papers mention ame-mir-193
(1 sentences)

Sequence

agggucgaagagugaguaaauggccgagggugauuugggccuuagugguccugugguggcugcguacgaauccUACUGGCCUGCUAAGUCCCAAgugauucucggcucgcgcugcgaua
...((((.((.((((.......(((((((((.(((((((.((((((((.((.((((.((.(........))))))).)).)))))))).))))))).))))))))))))).)).)))).

Structure

agg    a  a    guaaaug         g       c        u  u    u  c gcg 
   gucg ag guga       gccgagggu auuuggg cuuagugg cc gugg gg u   u
   |||| || ||||       ||||||||| ||||||| |||||||| || |||| || |    
   uagc uc cgcu       cggcucuua ugAACCC GAAUCGUC GG CAUc cu a   a
--a    g  g    -------         g       U        C  U    -  - agc 

Annotation confidence Not enough data

Genome context

CM000054.5: 204902-205020 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-193

Mature ame-miR-193-3p

• Accession: MIMAT0018508
• Description: Apis mellifera ame-miR-193-3p mature miRNA
• Sequence: 74 - UACUGGCCUGCUAAGUCCCAA - 94
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670