Stem-loop ame-mir-3718a

Accession

MI0016150

Description

Apis mellifera ame-mir-3718a precursor miRNA

Sequence

23993 reads, 418.0 reads per million, 24 experiments

uugaaagucguucccgauuuacauuAUCGGAUCAGGAUAGGGUAGGGCAgggccauuucgguauaaccauucugUCCCCUGUCCUGUCCCGAUAGUgagaaucgguacugaaucgaaauuaugaacgacuguuuauucau
.(((((((((((((((((((.(((((((((..((((((((((...(((((((((.....)))........))))))))))))))))..))))))))).))))))).................)))))))).....)))).

Structure

u    -----        -----------------       a         AU          UAG      --------   a 
 ugaa     agucguuc                 ccgauuu cauuAUCGG  CAGGAUAGGG   GGCAgg        gcc u
 ||||     ||||||||                 ||||||| |||||||||  ||||||||||   ||||||        ||| u
 acuu     ucagcaag                 ggcuaag gUGAUAGCC  GUCCUGUCCC   CUgucu        ugg u
u    auuug        uauuaaagcuaagucau       a         CU          ---      uaccaaua   c 

Annotation confidence High

Genome context

CM000059.5: 6820223-6820362 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-3718a

Mature ame-miR-3718a-5p

• Accession: MIMAT0053086
• Description: Apis mellifera ame-miR-3718a-5p mature miRNA
• Sequence: 26 - AUCGGAUCAGGAUAGGGUAGGGCA - 49
• Evidence: experimental ; SOLID [1]

Mature ame-miR-3718a-3p

• Accession: MIMAT0018520
• Description: Apis mellifera ame-miR-3718a-3p mature miRNA
• Sequence: 75 - UCCCCUGUCCUGUCCCGAUAGU - 96
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805