Stem-loop ame-mir-3049

Accession

MI0016158

Description

Apis mellifera ame-mir-3049 precursor miRNA

Literature search

4 open access papers mention ame-mir-3049
(6 sentences)

Sequence

4936 reads, 88.0 reads per million, 24 experiments

ugcaggaguaaaagcaauugaaucguguucccaggUCGGGAAGGUAGUUGCGGCGGAUUuggucaacugcaaaagUCCGUCCAACUCCUUUCCGUCUUGGuggcgcgaauuccuccuccu
...(((((...........((((((((((.(((((.((((((((.(((((.(((((((((.((.....))..)))))))))))))))))))))).))))).)))))).)))))))))...

Structure

ugc     uaaaagcaauu    -      c     U        U     C         -g  c 
   aggag           gaau cguguu ccagg CGGGAAGG AGUUG GGCGGAUUu  gu a
   |||||           |||| |||||| ||||| |||||||| ||||| |||||||||  || a
   uccuc           cuua gcgcgg GGUUC GCCUUUCC UCAAC CUGCCUgaa  cg c
ucc     -----------    a      u     U        -     -         aa  u 

Annotation confidence Medium

Genome context

CM000063.5: 3983815-3983934 [+]

Mature ame-miR-3049-5p

• Accession: MIMAT0022968
• Description: Apis mellifera ame-miR-3049-5p mature miRNA
• Sequence: 36 - UCGGGAAGGUAGUUGCGGCGGAUU - 59
• Evidence: experimental ; Illumina [2-3]

Mature ame-miR-3049-3p

• Accession: MIMAT0018528
• Description: Apis mellifera ame-miR-3049-3p mature miRNA
• Sequence: 76 - UCCGUCCAACUCCUUUCCGUCUUGG - 100
• Evidence: experimental ; SOLID [1], Illumina [4]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22458842
   Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
   "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
   "Insect Mol Biol (2012) 21:297-303


3. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670


4. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226