Stem-loop ame-mir-971

Accession

MI0016174

Description

Apis mellifera ame-mir-971 precursor miRNA

Literature search

1 open access papers mention ame-mir-971
(3 sentences)

Sequence

1679 reads, 29.0 reads per million, 24 experiments

ggagagggagagagacgaggaugcaccggggccgguuCACUUUAAGUUCGAAUACCAAGCcugucuauaaacaguUUGGUGUUCUACCUUACAGUGAGucgaccgugguaucgucgacguuccaaca
...(..((((.(...(((.(((..((((.((.(((((((((.((((...(((((((((((.(((......))))))))))))))...)))).))))))))).)).))))))).))).).))))..).

Structure

gga ag    a aga   g   gc    g  c         U    UUC           c   cu 
   g  ggag g   cga gau  accg gg cgguuCACU UAAG   GAAUACCAAGC ugu  a
   |  |||| |   ||| |||  |||| || ||||||||| ||||   ||||||||||| |||   
   c  ccuu c   gcu cua  uggu cc gcuGAGUGA AUUC   CUUGUGGUUug aca  u
--a aa    g --a   g   --    g  a         C    CAU           -   aa 

Annotation confidence High

Genome context

CM000068.5: 3886573-3886699 [-]

Mature ame-miR-971-5p

• Accession: MIMAT0053091
• Description: Apis mellifera ame-miR-971-5p mature miRNA
• Sequence: 38 - CACUUUAAGUUCGAAUACCAAGC - 60
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-971-3p

• Accession: MIMAT0018544
• Description: Apis mellifera ame-miR-971-3p mature miRNA
• Sequence: 76 - UUGGUGUUCUACCUUACAGUGAG - 98
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226