Stem-loop ame-mir-3782

Accession

MI0016190

Description

Apis mellifera ame-mir-3782 precursor miRNA

Sequence

553 reads, 8.0 reads per million, 24 experiments

gcuuuugccagaagacuuucucccgcgccuggucCCUGCAGAGACAUCUGGCGGACACGcauuuuuacgUGCCGCAGUCGCUCUGCUGCGAccagugcggcaggaguuacaagucgaggaacagucuggucagcc
(((...((((((.(((((.((((.((((((((((.(.((((((.(..(((.(((.((((........))))))))))..))))))).).)))))).)).)).))))....))))).........)))))).))).

Structure

-   uuu      --------a     ---u    c  -  -      C U      A AU   G   A    cau 
 gcu   gccaga         gacuu    cucc gc gc cugguc C GCAGAG C  CUG CGG CACG   u
 |||   ||||||         |||||    |||| || || |||||| | |||||| |  ||| ||| ||||    
 cga   uggucu         cugaa    gagg cg cg gaccAG G CGUCUC G  GAC GCC GUgc   u
c   --c      gacaaggag     cauu    a  g  u      C U      - CU   -   -    auu 

Annotation confidence High

Genome context

CM000064.5: 1972004-1972138 [+]

Mature ame-miR-3782-5p

• Accession: MIMAT0018560
• Description: Apis mellifera ame-miR-3782-5p mature miRNA
• Sequence: 35 - CCUGCAGAGACAUCUGGCGGACACG - 59
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-3782-3p

• Accession: MIMAT0053094
• Description: Apis mellifera ame-miR-3782-3p mature miRNA
• Sequence: 70 - UGCCGCAGUCGCUCUGCUGCGA - 91
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670