miRBase entry: ame-mir-3782

Stem-loop ame-mir-3782


Accession
MI0016190
Description
Apis mellifera ame-mir-3782 precursor miRNA


Sequence

gcuuuugccagaagacuuucucccgcgccuggucCCUGCAGAGACAUCUGGCGGACACgcauuuuuacgugccgcagucgcucugcugcgaccagugcggcaggaguuacaagucgaggaacagucuggucagcc
(((...((((((.(((((.((((.((((((((((.(.((((((.(..(((.(((.((((........))))))))))..))))))).).)))))).)).)).))))....))))).........)))))).))).

Structure
-   uuu      --------a     ---u    c  -  -      C U      A AU   G   A    cau 
 gcu   gccaga         gacuu    cucc gc gc cugguc C GCAGAG C  CUG CGG CACg   u
 |||   ||||||         |||||    |||| || || |||||| | |||||| |  ||| ||| ||||    
 cga   uggucu         cugaa    gagg cg cg gaccag g cgucuc g  gac gcc gugc   u
c   --c      gacaaggag     cauu    a  g  u      c u      - cu   -   -    auu 


Annotation confidence Not enough data
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Genome context
CM000064.5: 1972004-1972138 [+]

Database links

Mature ame-miR-3782-5p

Accession MIMAT0018560
Description Apis mellifera ame-miR-3782-5p mature miRNA
Sequence 35 - CCUGCAGAGACAUCUGGCGGACAC - 58
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670