Stem-loop ame-mir-9c

Accession

MI0016202

Description

Apis mellifera ame-mir-9c precursor miRNA

Literature search

2 open access papers mention ame-mir-9c
(2 sentences)

Sequence

800 reads, 10.0 reads per million, 24 experiments

gcuguuucacacauuucuaccaaaucgucccguuuauuuuUCUUUGGUGAGCUAACUGUAUGgugaauugaaaggccaUAAAGCUAGUUCAGCAAGGCAAgauauucgagacauagcuucaugaaaugugacugaaauu
...((((((((((((((.........(((.((..((((((.(((((.(((((((.((.((((((..........)))))).)).))))))).))))).))))))..)).)))..........))))))))..)))))).

Structure

gcu      --        -uaccaaauc   c  uu      U     G       A  G      gaau 
   guuuca  cacauuuc          guc cg  uauuuu CUUUG UGAGCUA CU UAUGgu    u
   ||||||  ||||||||          ||| ||  |||||| ||||| ||||||| || ||||||     
   uaaagu  guguaaag          cag gc  auagAA GGAAC ACUUGAU GA AUaccg    g
--u      ca        uacuucgaua   a  uu      C     G       C  A      gaaa 

Annotation confidence High

Genome context

CM000066.5: 1395236-1395374 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ame-mir-9c

Mature ame-miR-9c-5p

• Accession: MIMAT0053097
• Description: Apis mellifera ame-miR-9c-5p mature miRNA
• Sequence: 41 - UCUUUGGUGAGCUAACUGUAUG - 62
• Evidence: experimental ; SOLID [1]

Mature ame-miR-9c-3p

• Accession: MIMAT0018572
• Description: Apis mellifera ame-miR-9c-3p mature miRNA
• Sequence: 79 - UAAAGCUAGUUCAGCAAGGCAA - 100
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805