Stem-loop ame-mir-2944

Accession

MI0016203

Description

Apis mellifera ame-mir-2944 precursor miRNA mir-2944

Gene
family

RF04054; mir-2944

Literature search

2 open access papers mention ame-mir-2944
(3 sentences)

Sequence

7044 reads, 105.0 reads per million, 24 experiments

acuccagaaaauuuagaugaaagaauuCGGAGGAACUCUUGCUGUGAUAUguugccguaaaagauucaUAUCACAGCAGUAGUUACCUGGUAuucuuucgccuuucuucaccuuuaccaaggagc
.((((((((.....((.(((((((((....(((((((.(((((((((((((....(......)...))))))))))))).)))).)))...))))))))).)))))).............)))).

Structure

a    -------------    aauuu  a         uCGG   -    C             uugc gu 
 cucc             agaa     ag ugaaagaau    AGG AACU UUGCUGUGAUAUg    c  a
 ||||             ||||     || |||||||||    ||| |||| |||||||||||||    |   
 gagg             ucuu     uc gcuuucuuA    UCC UUGA GACGACACUAUac    g  a
c    aaccauuuccacu    -----  c         -UGG   A    U             -uua aa 

Annotation confidence High

Genome context

CM000066.5: 1395048-1395172 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ame-mir-2944

Mature ame-miR-2944-5p

• Accession: MIMAT0053098
• Description: Apis mellifera ame-miR-2944-5p mature miRNA
• Sequence: 28 - CGGAGGAACUCUUGCUGUGAUAU - 50
• Evidence: experimental ; SOLID [1]

Mature ame-miR-2944-3p

• Accession: MIMAT0018573
• Description: Apis mellifera ame-miR-2944-3p mature miRNA
• Sequence: 69 - UAUCACAGCAGUAGUUACCUGGUA - 92
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805