Stem-loop ame-mir-306

Accession

MI0016209

Description

Apis mellifera ame-mir-306 precursor miRNA

Literature search

4 open access papers mention ame-mir-306
(8 sentences)

Sequence

1682504 reads, 20173.0 reads per million, 24 experiments

aauucaguaaguaaggucaaacaaauauuuacuuugUCAGGUACUGAGUGACUCUGAGuauacauuaaauuacuCAAAGCAGCUUGGUACCUAACUgaguggauauugaauacaacaauuuuugaaa
..(((((.((((...........(((((((((((.((.(((((((((((..((.((((((..........)))))).))..))))))))))).)).)))))))))))..........))))))))).

Structure

aa     u    aaggucaaaca           u  C           GA  C      uaca 
  uucag aagu           aauauuuacuu gU AGGUACUGAGU  CU UGAGua    u
  ||||| ||||           ||||||||||| || |||||||||||  || ||||||     
  aaguu uuua           uuauaggugag CA UCCAUGGUUCG  GA ACucau    u
-a     -    -acaacauaag           U  A           AC  A      uaaa 

Annotation confidence High

Genome context

CM000066.5: 7887398-7887524 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-306

Mature ame-miR-306-5p

• Accession: MIMAT0018579
• Description: Apis mellifera ame-miR-306-5p mature miRNA
• Sequence: 37 - UCAGGUACUGAGUGACUCUGAG - 58
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-306-3p

• Accession: MIMAT0053100
• Description: Apis mellifera ame-miR-306-3p mature miRNA
• Sequence: 75 - CAAAGCAGCUUGGUACCUAACU - 96
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670