miRBase entry: ame-mir-3800

Stem-loop ame-mir-3800


Accession
MI0016217
Description
Apis mellifera ame-mir-3800 precursor miRNA


Sequence

uacugugguccacacguugacugucucgcggccacguuccuuaaaaggcgguaaaucacgcguuucgccuuccuuuuuaccggccacCGAGGCCGCUGAUUGUGCCAUAcauaa
...(((((..((((.((((.(.((((((.((((..((.......(((((((.............))))))).......)).))))..)))))).).))))))))))))).....

Structure
--uac     uc    c    a u      -c    ac  uccuuaa       uaaau 
     ugugg  caca guug c gucucg  ggcc  gu       aaggcgg     c
     |||||  |||| |||| | ||||||  ||||  ||       |||||||     a
     AUACC  GUGU UAGU G CGGAGC  ccgg  ca       uuccgcu     c
aauac     --    -    C C      ca    -c  uuuuucc       uugcg 


Annotation confidence Not enough data
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Genome context
CM000055.5: 11447203-11447316 [-]

Database links

Mature ame-miR-3800-3p

Accession MIMAT0018587
Description Apis mellifera ame-miR-3800-3p mature miRNA
Sequence 88 - CGAGGCCGCUGAUUGUGCCAUA - 109
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805