miRBase entry: ame-mir-3801

Stem-loop ame-mir-3801


Accession
MI0016218
Description
Apis mellifera ame-mir-3801 precursor miRNA


Sequence

auuggauccgguacaguguacaguuuugcgguacaAAUCGCGAUUGAGAAGGCGAGCcguaaugcaggcguauguacguaacaaucgcaacgguucgaugucagcgggguuuaucgagcuagaagguacggccuuggucu
...(((((.(((....(((((..(((.((.....(((((.((.((((.(...((((((((..(((..((((....)))).......))))))))))).).)))))).))))).....)).)))..))))))))..)))))

Structure
auu     -c   acag     ag   u  gguac     G  A    G AGG        aa   -----ag    a 
   ggauc  ggu    uguac  uuu gc     aAAUC CG UUGA A   CGAGCcgu  ugc       gcgu u
   |||||  |||    |||||  ||| ||     ||||| || |||| |   ||||||||  |||       ||||  
   ucugg  ccg    gcaug  aga cg     uuugg gc gacu u   gcuuggca  acg       ugca g
---     uu   ----     ga   u  agcua     g  -    g --a        --   cuaacaa    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000055.5: 11825440-11825579 [+]

Database links

Mature ame-miR-3801-5p

Accession MIMAT0018588
Description Apis mellifera ame-miR-3801-5p mature miRNA
Sequence 36 - AAUCGCGAUUGAGAAGGCGAGC - 57
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805