miRBase entry: ame-mir-2796

Stem-loop ame-mir-2796


Accession
MI0016221
Description
Apis mellifera ame-mir-2796 precursor miRNA mir-2796
Gene
family?
RF03381; mir-2796


Sequence

aaggagggaagagaaggaacguagcgauaagguuagggguuucuaucggccuccagcagcaacgaugguuGUAGGCCGGCGGAAACUACUUGCucuugucgcuaacgaucgucggcccgaaagaucca
..((((((....((..((.(((((((((((((.(((((((((((.(((((((......(((((....)))))))))))).))))))).)))).)))))))))).))).)).))..)))......))).

Structure
aa   ------   aaga  ag  a   -          u    -       a       ccagca     g 
  gga      ggg    ga  ga cgu agcgauaagg uagg gguuucu ucggccu      gcaac a
  |||      |||    ||  || ||| |||||||||| |||| ||||||| |||||||      |||||  
  ccu      ccc    cu  cu gca ucgcuguucu GUUC UCAAAGG GGCCGGA      UGuug u
-a   agaaag   --gg  -g  a   a          C    A       C       ------     g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000060.5: 8061023-8061150 [-]

Database links

Mature ame-miR-2796-3p

Accession MIMAT0018591
Description Apis mellifera ame-miR-2796-3p mature miRNA
Sequence 71 - GUAGGCCGGCGGAAACUACUUGC - 93
Evidence experimental
SOLID [1], Illumina [2-3]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  3. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226