miRBase entry: ame-mir-3730

Stem-loop ame-mir-3730


Accession
MI0016228
Description
Apis mellifera ame-mir-3730 precursor miRNA


Sequence

uaacuucauuauguaucgcgaugaACAACGAGGGUGAAGAUUGCGUGuauuuguaaauucgcaucucuauccucguuucuguaucaucccagcu
.................(((((((((((((((((((.((((.(((.((........)).))))))).)))))))))...))).)))))...)).

Structure
uaacuucauuauguauc  ---     -   ---         A    U   U  auu 
                 gc   gauga ACA   ACGAGGGUG AGAU GCG Gu   u
                 ||   ||||| |||   ||||||||| |||| ||| ||    
                 cg   cuacu ugu   ugcuccuau ucua cgc ua   g
----------------u  acc     a   cuu         c    -   u  aau 


Annotation confidence Not enough data
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Genome context
CM000058.5: 6958614-6958707 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ame-mir-3730
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-3730-5p

Accession MIMAT0018598
Description Apis mellifera ame-miR-3730-5p mature miRNA
Sequence 25 - ACAACGAGGGUGAAGAUUGCGUG - 47
Evidence experimental
SOLID [1], Illumina [2-3]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  3. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226