Stem-loop ame-mir-750

Accession

MI0016245

Description

Apis mellifera ame-mir-750 precursor miRNA

Literature search

4 open access papers mention ame-mir-750
(15 sentences)

Sequence

1256942 reads, 15368.0 reads per million, 24 experiments

gggcguugcauggacugugaucugcaugacuugcAGUUGGAAGUGAGGAUCUAGGCAgugagcagcagcgcucugauaacuugCCAGAUCUAACUCUUCCAGCUCAaggucuuguugauuaucaucucccaaacga
...((((....(((..((((((.(((.(((((..(((((((((.(.((((((.((((((((((......)))).....)).))))))))))..).)))))))))..))))).))).))))))..)))....)))).

Structure

ggg    gcau   cu      u   u     gc         U -A      A    -  -----    ag 
   cguu    gga  gugauc gca gacuu  AGUUGGAAG G  GGAUCU GGCA gu     gagc  c
   ||||    |||  |||||| ||| |||||  ||||||||| |  |||||| |||| ||     ||||   
   gcaa    ucu  uauuag ugu cugga  UCGACCUUC C  UCUAGA CCgu ca     cucg  a
--a    accc   ac      u   u     AC         U AA      -    u  auagu    cg 

Annotation confidence High

Genome context

GL631151.1: 1934-2069 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-750

Mature ame-miR-750-5p

• Accession: MIMAT0053108
• Description: Apis mellifera ame-miR-750-5p mature miRNA
• Sequence: 35 - AGUUGGAAGUGAGGAUCUAGGCA - 57
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature ame-miR-750-3p

• Accession: MIMAT0018615
• Description: Apis mellifera ame-miR-750-3p mature miRNA
• Sequence: 84 - CCAGAUCUAACUCUUCCAGCUCA - 106
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226