Stem-loop tae-MIR398

Accession

MI0016466

Description

Triticum aestivum tae-MIR398 precursor miRNA

Literature search

22 open access papers mention tae-MIR398
(76 sentences)

Sequence

1851613 reads, 8568 reads per million, 115 experiments

auacgcgaggaaauuccugcggggucgaacugggaacacaugggauacgaaccgcuugauugacgagcgacucuuaucaacucaUGUGUUCUCAGGUCGCCCCCGcuggagccuccucgc
....(((((((..((((.((((((.(((.((((((((((((((((((.((..((((((.....))))))..)).))))...)))))))))))))).))).)))))).))))..)))))))

Structure

auac       aa    u      u   a              ---    c  ac      a 
    gcgagga  uucc gcgggg cga cugggaacacaugg   gaua ga  cgcuug u
    |||||||  |||| |||||| ||| ||||||||||||||   |||| ||  |||||| u
    cgcuccu  gagg cGCCCC GCU GACUCUUGUGUacu   cuau cu  gcgagc g
----       cc    u      C   G              caa    u  ca      a 

Annotation confidence High

Genome context

3B: 662632381-662632500 [+]

Mature tae-miR398

• Accession: MIMAT0018225
• Description: Triticum aestivum tae-miR398 mature miRNA
• Sequence: 85 - UGUGUUCUCAGGUCGCCCCCG - 105
• Evidence: not_experimental

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443