Stem-loop tae-MIR398

Accession

MI0016466

Description

Triticum aestivum tae-MIR398 precursor miRNA

Literature search

31 open access papers mention tae-MIR398
(104 sentences)

Sequence

1844739 reads, 7742.0 reads per million, 225 experiments

auacgcgaggaaauuccugcGGGGUCGAACUGGGAACACAUgggauacgaaccgcuugauugacgagcgacucuuaucaacucauGUGUUCUCAGGUCGCCCCCGCuggagccuccucgc
....(((((((..((((.((((((.(((.((((((((((((((((((.((..((((((.....))))))..)).))))...)))))))))))))).))).)))))).))))..)))))))

Structure

auac       aa    u      U   A              ---    c  ac      a 
    gcgagga  uucc gcGGGG CGA CUGGGAACACAUgg   gaua ga  cgcuug u
    |||||||  |||| |||||| ||| ||||||||||||||   |||| ||  |||||| u
    cgcuccu  gagg CGCCCC GCU GACUCUUGUGuacu   cuau cu  gcgagc g
----       cc    u      C   G              caa    u  ca      a 

Annotation confidence High

Genome context

3B: 662632381-662632500 [+]

Mature tae-miR398-5p

• Accession: MIMAT0061482
• Description: Triticum aestivum tae-miR398-5p mature miRNA
• Sequence: 21 - GGGGUCGAACUGGGAACACAU - 41
• Evidence: experimental ; unknown

Mature tae-miR398-3p

• Accession: MIMAT0018225
• Description: Triticum aestivum tae-miR398-3p mature miRNA
• Sequence: 86 - GUGUUCUCAGGUCGCCCCCGC - 106
• Evidence: not_experimental

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443