Stem-loop tae-MIR444b

Accession

MI0016467

Description

Triticum aestivum tae-MIR444b precursor miRNA

Literature search

13 open access papers mention tae-MIR444b
(30 sentences)

Sequence

80568 reads, 449.0 reads per million, 226 experiments

gauaugcauguggcggcaccgaGCAUGAGGCAACAACUGCAUUacuugcggggaaggcgcaaguaggacaccugcauuacuugcaaacaaggcgcaccauacuuguggcuuucuugcaagucgugcagUUGCUGCCUCAAGCUUGCUGCcuccacauguaua
..(((((((((((.((((.(((((.(((((((.(((((((((.(((((((((((((.((((((((((.(.((((((.....))).....))).)..)).)))))))).))))))))))))).))))))))).))))))).))))).)))).)))))))))))

Structure

ga           c    c     A       A         U             g        -  -a a   -----   u 
  uaugcaugugg ggca cgaGC UGAGGCA CAACUGCAU acuugcggggaag cgcaagua gg  c ccu     gca u
  ||||||||||| |||| ||||| ||||||| ||||||||| ||||||||||||| |||||||| ||  | |||     ||| a
  auauguacacc cCGU GUUCG ACUCCGU GUUgacgug ugaacguucuuuc guguucau cc  g gga     cgu c
--           u    C     A       C         c             g        a  ac c   acaaa   u 

Annotation confidence Medium

Genome context

Unknown

Mature tae-miR444b-5p

• Accession: MIMAT0056502
• Description: Triticum aestivum tae-miR444b-5p mature miRNA
• Sequence: 23 - GCAUGAGGCAACAACUGCAUU - 43
• Evidence: experimental ; unknown

Mature tae-miR444b-3p

• Accession: MIMAT0018226
• Description: Triticum aestivum tae-miR444b-3p mature miRNA
• Sequence: 129 - UUGCUGCCUCAAGCUUGCUGC - 149
• Evidence: not_experimental

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443