Stem-loop ath-MIR3932a

Accession

MI0016587

Description

Arabidopsis thaliana ath-MIR3932a precursor miRNA MIR3932

Gene
family

RF03670; MIR3932

Sequence

6330 reads, 43.0 reads per million, 160 experiments

ugcucuucuaugucuucaucgucaucacaaauuucuucaaacuuaaauAUCUUAAGGACCUUCAACGGACUUgauaauagagaUUAACGAACUUUGUGAUGACAAcgaagauacagaggauca
((.((((((.(((((((...(((((((((((.(((......(((...((((..(((..((......)).)))))))...)))......))).)))))))))))...))))))).)))))).))

Structure

  c      a       auc           u   uucaaa   aaa    UU   GA  UU 
ug ucuucu ugucuuc   gucaucacaaa uuc      cuu   uAUC  AAG  CC  C
|| |||||| |||||||   ||||||||||| |||      |||   ||||  |||  ||   
ac aggaga auagaag   CAGUAGUGUUU AAG      gag   auag  UUC  GG  A
  u      c       cAA           C   CAAUUa   aua    --   -A  CA 

Annotation confidence Low

Genome context

chr4: 2179000-2179122 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR3932a

Mature ath-miR3932a-5p

• Accession: MIMAT0053901
• Description: Arabidopsis thaliana ath-miR3932a-5p mature miRNA
• Sequence: 49 - AUCUUAAGGACCUUCAACGGACUU - 72
• Evidence: experimental ; unknown

Mature ath-miR3932a-3p

• Accession: MIMAT0018346
• Description: Arabidopsis thaliana ath-miR3932a-3p mature miRNA
• Sequence: 84 - UUAACGAACUUUGUGAUGACAA - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20621980
   siRNAs from miRNA sites mediate DNA methylation of target genes
   "Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H"
   "Nucleic Acids Res (2010) 38:6883-6894